Geschmack ist vorhersagbar: Mit FlavorMiner. FlavorMiner heißt das Tool, das IPB-Chemiker und Partner aus Kolumbien jüngst entwickelt haben. Das Programm kann, basierend auf maschinellem Lernen (KI), anhand der…
Seit Februar 2021 bietet Wolfgang Brandt, ehemaliger Leiter der Arbeitsgruppe Computerchemie am IPB, sein Citizen Science-Projekt zur Pilzbestimmung an. Dafür hat er in regelmäßigen Abständen öffentliche Vorträge zur Vielfalt…
Isayenkov, S.; Fester, T.; Hause, B.;Rapid determination of fungal colonization and arbuscule formation in roots of Medicago truncatula using real-time (RT) PCRJ. Plant Physiol.1611379-1383(2004)DOI: 10.1016/j.jplph.2004.04.012
The quantifications of root colonization and symbiotic activity in the arbuscular mycorrhizal (AM) association of Medicago truncatula and Glomus intraradices were performed by quantitative polymerase chain reaction (real-time PCR). A strong correlation between fungal colonization of the root system and the amounts of fungal rDNA and rRNA were shown. In contrast, the transcript levels of the AM-specific phosphate transporter 4 from M. truncatula (MtPT4) correlate with arbuscule formation rather than with fungal colonization. These results suggest (i) that real-time PCR assay is a rapid, useful, and accurate method for the determination of arbuscular mycorrhizal features, (ii) that the amount of fungal rDNA or rRNA is a good parameter to estimate fungal colonization, and (iii) that it is necessary to evaluate the amount of other transcripts—like the MtPT4 transcript—to obtain additional information about the symbiotic state of the colonized root system.
Publikation
Huneck, S.; Feige, G. B.; Schmidt, J.;Chemie von Cladonia furcata und Cladonia rangiformisHerzogia1751-58(2004)
Eleven collections of Cladonia furcata and fourteen of Cladonia rangiformis, mainly from Saxony Anhalt (Germany) have been analyzed for their lichen substances by HPLC and HPLC-MS. The main compounds of C. furcata are fumarprotocetraric acid, atranorin, protocetraric acid, rangiformic acid, bourgeanic acid, norrangiformic acid and the new lichen metabolite 1-methyl 3,4-dicarboxydecanoate. C. rangiformis is characterized by atranorin, rangiformic acid, norrangiformic acid and 1-methyl 3,4-dicarboxyhexadecanoate, while bourgeanic acid is absent.
Publikation
Hirata, K.; Poeaknapo, C.; Schmidt, J.; Zenk, M. H.;1,2-Dehydroreticuline synthase, the branch point enzyme opening the morphinan biosynthetic pathwayPhytochemistry651039-1046(2004)DOI: 10.1016/j.phytochem.2004.02.015
A synthase which oxidizes (S)-reticuline to 1,2-dehydroreticuline has been found to occur in seedlings of opium poppy (Papaver somniferum L.). Due to its instability, this enzyme could only be partly purified (ca. 5-fold enrichment). Partial characterization at this stage of purification showed that it does not need a redox cofactor and accepts both (S)-reticuline and (S)-norreticuline as substrates. [1-2H, 13C]-(R,S)-reticuline was enzymatically converted into [1-13C]-dehydroreticuline, which has been identified by mass spectrometry. Release of the hydrogen atom in position C-1 of the isoquinoline alkaloid during the oxidative conversion, was exploited as a sensitive assay system for this enzyme. The enzyme has a pH optimum of 8.75, a temperature optimum of 37 °C and the apparent KM value for the substrate reticuline was shown to be 117 μM. Moreover it could be demonstrated by sucrose density gradient centrifugation that the enzyme is located in vesicles of varying size. In combination with the previously discovered strictly stereoselective and NADPH dependent 1,2-dehydroreticuline reductase the detection of this enzyme, the 1,2-dehydroreticuline synthase, provides the necessary inversion of configuration and completes the pathway from two molecules of L-tyrosine via (S)-norcoclaurine to (R)-reticuline in opium poppy involving a total number of 11 enzymes.A synthase which oxidizes (S)-reticuline to 1,2-dehydroreticuline has been found to occur in seedlings of opium poppy (Papaver somniferum L.)
Publikation
Harada, E.; von Roepenack-Lahaye, E.; Clemens, S.;A cyanobacterial protein with similarity to phytochelatin synthases catalyzes the conversion of glutathione to γ-glutamylcysteine and lacks phytochelatin synthase activityPhytochemistry653179-3185(2004)DOI: 10.1016/j.phytochem.2004.09.017
Phytochelatins are glutathione-derived, non-translationally synthesized peptides essential for cadmium and arsenic detoxification in plant, fungal and nematode model systems. Recent sequencing programs have revealed the existence of phytochelatin synthase-related genes in a wide range of organisms that have not been reported yet to produce phytochelatins. Among those are several cyanobacteria. We have studied one of the encoded proteins (alr0975 from Nostoc sp. strain PCC 7120) and demonstrate here that it does not possess phytochelatin synthase activity. Instead, this protein catalyzes the conversion of glutathione to γ-glutamylcysteine. The thiol spectrum of yeast cells expressing alr0975 shows the disappearance of glutathione and the formation of a compound that by LC–MSMS analysis was unequivocally identified as γ-glutamylcysteine. Purified recombinant protein catalyzes the respective reaction. Unlike phytochelatin synthesis, the conversion of glutathione to γ-glutamylcysteine is not dependent on activation by metal cations. No evidence was found for the accumulation of phytochelatins in cyanobacteria even after prolonged exposure to toxic Cd2+ concentrations. Expression of alr0975 was detected in Nostoc sp. cells with an antiserum raised against the protein. No indication for a responsiveness of expression to toxic metal exposure was found. Taken together, these data provide further evidence for possible additional functions of phytochelatin synthase-related proteins in glutathione metabolism and provide a lead as to the evolutionary history of phytochelatin synthesis.