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Publikation

Mekkaoui, K.; Baral, R.; Smith, F.; Klein, M.; Feussner, I.; Hause, B.; Transcriptomics and trans-organellar complementation reveal limited signaling of 12-cis-oxo-phytodienoic acid during early wound response in Arabidopsis Nat. Commun. 16 6684 (2025) DOI: 10.1038/s41467-025-61832-9
  • Abstract
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  • BibText
  • RIS

12-cis-oxo-phytodienoic acid (OPDA), a precursor of jasmonoyl-isoleucine (JA-Ile), is known to have distinct signaling roles in Arabidopsis, as shown in studies using the opr3 mutant, which lacks OPDA REDUCTASE3 (OPR3). This mutant, however, accumulates low levels of JA-Ile through an OPR2-mediated bypass. To investigate OPDA signaling, the wound-induced transcriptome of the opr2opr3 mutant is compared to that of wild-type and allene oxide synthase mutant. Endogenous OPDA shows no unique transcriptional signature under control or wounding conditions, and previously identified OPDA-responsive genes are wound-induced independently of OPDA. Applying OPDA to opr2opr3 triggers a distinct response suggesting compartmentalization of endogenously formed OPDA. Trans-organellar complementation reveals that expression of OPR3 or OPR2 in opr2opr3 restores JA-Ile production regardless of localization, whereas mitochondrial targeted OPR1 exhibiting low OPDA/4,5-ddh-JA conversion activity does not. Our findings show that OPDA primarily serves as a JA precursor with limited independent signaling functions in the early wound response.

Preprints

Mekkaoui, K.; Baral, R.; Smith, F.; Klein, M.; Feussner, I.; Hause, B.; Unraveling the role of 12-cis-oxo-phytodienoic acid in the wound response of Arabidopsis thaliana: Insights from transcriptomic and complementation studies bioRxiv (2024) DOI: 10.1101/2024.03.22.586262
  • Abstract
  • Internet
  • BibText
  • RIS

In addition to jasmonoyl-isoleucine (JA-Ile), a well-established signaling molecule for plant growth and defense, its precursor, cis-12-oxo-phytodienoic acid (OPDA), is thought to possess independent signaling functions. Its perception in vascular plants is still uncharacterized. Several OPDA functions in Arabidopsis were inferred from a mutant that is affected in the function of the OPDA REDUCTASE3 (OPR3), catalyzing the conversion of OPDA within peroxisomes. Recently, opr3 plants were found to accumulate JA-Ile via a cytosolic OPR2-mediated bypass. Given the uncoupling of OPDA and JA biosynthesis in the JA-deficient mutant opr2opr3, potential OPDA signaling was investigated by a transcriptome approach comparing wild type, opr2opr3 and the JA- and OPDA-deficient mutantallene oxide synthase. Dissecting the wound response of seedlings revealed that OPDA lacked a transcriptional signature, and that previously characterized OPDA-response genes were wound-induced independently of OPDA. Exogenous application of OPDA to opr2opr3 seedlings led to JA-Ile formation and signaling even in absence of OPR2 and OPR3 and resulted in activation of sulfur assimilation. These divergent responses to endogenously synthesized and applied OPDA suggest a compartmentalization of endogenous OPDA which was investigated by a trans-organellar complementation approach. OPR3 complemented the opr2opr3 mutant in terms of fertility and wound-induced JA-Ile production irrespective of its subcellular localization. In vitro enzymatic activity of OPR3, however, showed conversion of OPDA and 4,5-didehydro-JA (4,5-ddh-JA), therefore not allowing to conclude which compound is translocated. Dissecting the conversion of either OPDA or 4,5-ddh-JA by OPR2 and OPR1 organelle variants pointed to a strong OPDA compartmentalization supporting its lacking signaling capacity.

Preprints

Buhl, J.; Klemm, S.; Kölling, M.; Ruhnow, F.; Ihling, C.; Tüting, C.; Dahiya, P.; Patzsch, J.; Colin, L.; Stamm, G.; Sinz, A.; Kastritis, P. L.; Persson, S.; Bürstenbinder, K.; IQD2 recruits KLCR1 to the membrane-microtubule nexus to promote cytoskeletal mechano-responsiveness in leaf epidermis pavement cells bioRxiv (2024) DOI: 10.1101/2024.10.01.615909
  • Abstract
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Plant cells experience a variety of mechanical stresses from both internal and external sources, including turgor pressure, mechanical strains arising from heterogeneous growth between neighboring cells, and environmental factors like touch from soil, rain, or wind [1,2]. These stresses serve as signals at the cell-, tissue- and organismal level to coordinate plant growth during development and stress responses [3]. In plants, the physical cell wall-plasma membrane-microtubule continuum is proposed to be integral in transducing mechanical signals from the exterior to intracellular components [4–6]. Cortical microtubules (CMTs) rapidly reorient in response to mechanical stress to align with the maximal tensile stress direction [7,8]. Several studies proposed that CMTs themselves may act as stress sensors; the precise mechanisms involved in the regulation of CMTs and the modes of sensing, however, are still not clearly understood. Here, we show that IQD2 and KLCR1 are enriched at CMTs in proximity to the plasma membrane. IQD2, which is a bona fide microtubule-associated protein, promotes microtubule localization of KLCR1. By combining cross-linking mass spectrometry (XL-MS) and computational modeling with structure-function studies, we present first experimental insights into the composition and structure of IQD2-KLCR1 complexes. Further, we demonstrate that the IQD2-KLCR1 module is a positive regulator of microtubule mechano-responses in pavement cells. Collectively, our work identifies the IQD2-KLCR1 module as novel regulator of mechanostress-mediated CMT reorientation and provides a framework for future mechanistic studies aimed at a functional dissection of mechanotransduction at the plasma membrane-CMT interface during growth and plant morphogenesis.HighlightsIQD2 and KLCR1 localize to the plasma membrane-microtubule nexusIQD2 is required for efficient microtubule targeting of KLCR1in plantaIQD2 physically interacts with KLCR1 and microtubulesThe IQD2-KLCR1 module promotes mechano-stress induced microtubule reorganization

Publikation

Chen, J.; Bartoš, J.; Boudichevskaia, A.; Voigt, A.; Rabanus-Wallace, M. T.; Dreissig, S.; Tulpová, Z.; Šimková, H.; Macas, J.; Kim, G.; Buhl, J.; Bürstenbinder, K.; Blattner, F. R.; Fuchs, J.; Schmutzer, T.; Himmelbach, A.; Schubert, V.; Houben, A.; The genetic mechanism of B chromosome drive in rye illuminated by chromosome-scale assembly Nat. Commun. 15 9686 (2024) DOI: 10.1038/s41467-024-53799-w
  • Abstract
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  • BibText
  • RIS

The genomes of many plants, animals, and fungi frequently comprise dispensable B chromosomes that rely upon various chromosomal drive mechanisms to counteract the tendency of non-essential genetic elements to be purged over time. The B chromosome of rye – a model system for nearly a century – undergoes targeted nondisjunction during first pollen mitosis, favouring segregation into the generative nucleus, thus increasing their numbers over generations. However, the genetic mechanisms underlying this process are poorly understood. Here, using a newly-assembled, ~430 Mb-long rye B chromosome pseudomolecule, we identify five candidate genes whose role as trans-acting moderators of the chromosomal drive is supported by karyotyping, chromosome drive analysis and comparative RNA-seq. Among them, we identify DCR28, coding a microtubule-associated protein related to cell division, and detect this gene also in the B chromosome of Aegilops speltoides. The DCR28 gene family is neo-functionalised and serially-duplicated with 15 B chromosome-located copies that are uniquely highly expressed in the first pollen mitosis of rye.

Preprints

Dahiya, P.; Haluška, S.; Buhl, J.; Kölling, M.; Papsdorf, S.; Zehnich, D.; Machalett, K.; Pfeiffer, P.; Stamm, G.; Potocký, M.; Bürstenbinder, K.; Origin and evolution of IQD scaffolds and assembled protein complexes in plant cell division SSRN Electronic Journal (2023) DOI: 10.2139/ssrn.4655235
  • Abstract
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In ancestors of modern-day streptophyte algae, cell division has undergone a switch from a cleavage-like mode to an inside-out mechanism, in which new cell walls are inserted at the cell center and expand centrifugally, eventually fusing with the maternal cell wall at a specific cortical region, termed cortical division zone (CDZ) 1-3. This switch in cell division involved the stepwise evolution of two novel cytoskeleton arrays, the phragmoplast and preprophase band (PPB). The PPB/phragmoplast system possibly provided basis for tunable cell division orientation, which enabled 3D development and morphological adaptations required for successful colonization of terrestrial habitats4. How the cytoskeleton acquired its novel functions, however, is still largely enigmatic. Our previous work identified IQ67-DOMAIN8 (IQD8) of Arabidopsis thaliana as an important determinant of PPB formation and division plane positioning5,6. IQD8 is an intrinsically disordered scaffold protein that interacts with core components of the CDZ7. Here, through phylogenetic and functional analyses, we show that IQDs emerged in the last common ancestor of Klebsormidiophyceae and Phragmoplastophyta algae. Gradual changes in motif composition and acquisition likely facilitated functional diversification of IQDs in terms of subcellular localization and protein-protein interactions. Cross-complementation studies in Arabidopsis mutants provide evidence for evolutionarily conserved functions of land-plant IQDs as key regulators of PPB formation and division plane control. In summary, our work establishes IQDs as plant-specific scaffold proteins, which likely played a role in rewiring and neofunctionalization of protein-protein interaction networks at distinct subcellular sites to facilitate evolutionary adaptations of the cell division apparatus and microtubule cytoskeleton in general.

Publikation

Nietzschmann, L.; Smolka, U.; Perino, E. H. B.; Gorzolka, K.; Stamm, G.; Marillonnet, S.; Bürstenbinder, K.; Rosahl, S.; The secreted PAMP-induced peptide StPIP1_1 activates immune responses in potato Sci. Rep. 13 20534 (2023) DOI: 10.1038/s41598-023-47648-x
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Treatment of potato plants with the pathogen-associated molecular pattern Pep-13 leads to the activation of more than 1200 genes. One of these, StPIP1_1, encodes a protein of 76 amino acids with sequence homology to PAMP-induced secreted peptides (PIPs) from Arabidopsis thaliana. Expression of StPIP1_1 is also induced in response to infection with Phytophthora infestans, the causal agent of late blight disease. Apoplastic localization of StPIP1_1-mCherry fusion proteins is dependent on the presence of the predicted signal peptide. A synthetic peptide corresponding to the last 13 amino acids of StPIP1_1 elicits the expression of the StPIP1_1 gene itself, as well as that of pathogenesis related genes. The oxidative burst induced by exogenously applied StPIP1_1 peptide in potato leaf disks is dependent on functional StSERK3A/B, suggesting that StPIP1_1 perception occurs via a receptor complex involving the co-receptor StSERK3A/B. Moreover, StPIP1_1 induces expression of FRK1 in Arabidopsis in an RLK7-dependent manner. Expression of an RLK from potato with high sequence homology to AtRLK7 is induced by StPIP1_1, by Pep-13 and in response to infection with P. infestans. These observations are consistent with the hypothesis that, upon secretion, StPIP1_1 acts as an endogenous peptide required for amplification of the defense response.

Publikation

Bürstenbinder, K.; Schwarzerová, K.; European Plant Cytoskeletal Club meeting: A vital platform for advancing plant cytoskeleton research Cytoskeleton 80 397-399 (2023) DOI: 10.1002/cm.21780
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This contribution reports on a meeting of plant cytoskeleton scientists-the European Plant Cytoskeletal Club 2023 conference.

Publikation

Bao, Z.; Guo, Y.; Deng, Y.; Zang, J.; Zhang, J.; Deng, Y.; Ouyang, B.; Qu, X.; Bürstenbinder, K.; Wang, P.; Microtubule-associated protein SlMAP70 interacts with IQ67-domain protein SlIQD21a to regulate fruit shape in tomato Plant Cell 35 4266-4283 (2023) DOI: 10.1093/plcell/koad231
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Tomato (Solanum lycopersicum) fruit shape is related to microtubule organization and the activity of microtubule-associated proteins (MAPs). However, insights into the mechanism of fruit shape formation from a cell biology perspective remain limited. Analysis of the tissue expression profiles of different microtubule regulators revealed that functionally distinct classes of MAPs, including members of the plant-specific MICROTUBULE-ASSOCIATED PROTEIN 70 (MAP70) and IQ67 DOMAIN (IQD, also named SUN in tomato) families, are differentially expressed during fruit development. SlMAP70-1–3 and SlIQD21a are highly expressed during fruit initiation, which relates to the dramatic microtubule pattern rearrangements throughout this developmental stage of tomato fruits. Transgenic tomato lines overexpressing SlMAP70-1 or SlIQD21a produced elongated fruits with reduced cell circularity and microtubule anisotropy, while their loss-of-function mutants showed the opposite phenotype, harboring flatter fruits. Fruits were further elongated in plants coexpressing both SlMAP70-1 and SlIQD21a. We demonstrated that SlMAP70s and SlIQD21a physically interact and that the elongated fruit phenotype is likely due to microtubule stabilization induced by the SlMAP70–SlIQD21a interaction. Together, our results identify SlMAP70 proteins and SlIQD21a as important regulators of fruit elongation and demonstrate that manipulating microtubule function during early fruit development provides an effective approach to alter fruit shape.

Bücher und Buchkapitel

Klemm, S.; Buhl, J.; Möller, B.; Bürstenbinder, K.; Quantitative analysis of microtubule organization in leaf epidermis pavement cells Hussey, P.J., Wang, P. The Plant Cytoskeleton 2604 43-61 (2023) ISBN:978-1-0716-2866-9 DOI: 10.1007/978-1-0716-2867-6_4
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Leaf epidermis pavement cells form highly complex shapes with interlocking lobes and necks at their anticlinal walls. The microtubule cytoskeleton plays essential roles in pavement cell morphogenesis, in particular at necks. Vice versa, shape generates stress patterns that regulate microtubule organization. Genetic or pharmacological perturbations that affect pavement cell shape often affect microtubule organization. Pavement cell shape and microtubule organization are therefore closely interconnected. Here, we present commonly used approaches for the quantitative analysis of pavement cell shape characteristics and of microtubule organization. In combination with ablation experiments, these methods can be applied to investigate how different genotypes (or treatments) affect the organization and stress responsiveness of the microtubule cytoskeleton.

Publikation

Dahiya, P.; Bürstenbinder, K.; The making of a ring: Assembly and regulation of microtubule-associated proteins during preprophase band formation and division plane set-up Curr. Opin. Plant Biol. 73 102366 (2023) DOI: 10.1016/j.pbi.2023.102366
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The preprophase band (PPB) is a transient cytokinetic structure that marks the future division plane at the onset of mitosis. The PPB forms a dense cortical ring of mainly microtubules, actin filaments, endoplasmic reticulum, and associated proteins that encircles the nucleus of mitotic cells. After PPB disassembly, the positional information is preserved by the cortical division zone (CDZ). The formation of the PPB and its contribution to timely CDZ set-up involves activities of functionally distinct microtubule-associated proteins (MAPs) that interact physically and genetically to support robust division plane orientation in plants. Recent studies identified two types of plant-specific MAPs as key regulators of PPB formation, the TON1 RECRUITMENT MOTIF (TRM) and IQ67 DOMAIN (IQD) families. Both families share hallmarks of disordered scaffold proteins. Interactions of IQDs and TRMs with multiple binding partners, including the microtubule severing KATANIN1, may provide a molecular framework to coordinate PPB formation, maturation, and disassembly.

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