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Authors Title Publication Volume Booktitle Editors Pages Year
Döll, S. & Djalali Farahani-Kofoet, R. & Zrenner, R. & Henze, A. & Witzel, K. Tissue-specific signatures of metabolites and proteins in asparagus roots and exudates Hortic Res 8     86 2021
Stark, P. & Zab, C. & Porzel, A. & Franke, K. & Rizzo, P. & Wessjohann, L. A. PSYCHE - a valuable experiment in plant NMR-metabolomics RADAR         2020
Serag, A. & Baky, M. H. & Döll, S. & Farag, M. A. UHPLC-MS metabolome based classification of umbelliferous fruit taxa: a prospect for phyto-equivalency of its different accessions and in response to roasting RSC Adv. 10     76-85 2020
Dietz, S. & Herz, K. & Gorzolka, K. & Jandt, U. & Bruelheide, H. & Scheel, D. Root exudate composition of grass and forb species in natural grasslands Sci. Rep. 10     10691 2020
Vieira, S. & Sikorski, J. & Dietz, S. & Herz, K. & Schrumpf, M. & Bruelheide, H. & Scheel, D. & Friedrich, M. W. & Overmann, J. Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands ISME J. 14     463-475 2020
Jozefowicz, A. M. & Döll, S. & Mock, H.-P. Proteomic Approaches to Identify Proteins Responsive to Cold Stress Methods Mol. Biol. 2156 Plant Cold Acclimation   161-170 2020
Nietzschmann, L. & Gorzolka, K. & Smolka, U. & Matern, A. & Eschen-Lippold, L. & Scheel, D. & Rosahl, S. Early Pep-13-induced immune responses are SERK3A/B-dependent in potato Sci. Rep. 9     18380 2019
Matern, A. & Böttcher, C. & Eschen-Lippold, L. & Westermann, B. & Smolka, U. & Döll, S. & Trempel, F. & Aryal, B. & Scheel, D. & Geisler, M. & Rosahl, S. A substrate of the ABC transporter PEN3 stimulates bacterial flagellin (flg22)-induced callose deposition in Arabidopsis thaliana J. Biol. Chem. 294     6857-6870 2019
Herz, K. & Dietz, S. & Gorzolka, K. & Haider, S. & Jandt, U. & Scheel, D. & Bruelheide, H. Correction: Linking root exudates to functional plant traits PLOS ONE 14     e0213965 2019
Dietz, S. & Herz, K. & Döll, S. & Haider, S. & Jandt, U. & Bruelheide, H. & Scheel, D. Semi‐polar root exudates in natural grassland communities Ecol. Evol. 9     5526-5541 2019
Ruttkies, C. & Schymanski, E. L. & Strehmel, N. & Hollender, J. & Neumann, S. & Williams, A. J. & Krauss, M. Supporting non-target identification by adding hydrogen deuterium exchange MS/MS capabilities to MetFrag Anal. Bioanal. Chem. 411     4683-4700 2019
Doell, S. & Arens, N. & Mock, H. Liquid Chromatography and Liquid Chromatography–Mass Spectrometry of Plants: Techniques and Applications     Encyclopedia of Analytical Chemistry     2019
Herz, K. & Dietz, S. & Gorzolka, K. & Haider, S. & Jandt, U. & Scheel, D. & Bruelheide, H. Linking root exudates to functional plant traits PLOS ONE 13     e0204128 2018
Peters, K. & Gorzolka, K. & Bruelheide, H. & Neumann, S. Seasonal variation of secondary metabolites in nine different bryophytes Ecol. Evol. 8     9105-9117 2018
Peters, K. & Worrich, A. & Weinhold, A. & Alka, O. & Balcke, G. & Birkemeyer, C. & Bruelheide, H. & Calf, O. W. & Dietz, S. & Dührkop, K. & Gaquerel, E. & Heinig, U. & Kücklich, M. & Macel, M. & Müller, C. & Poeschl, Y. & Pohnert, G. & Ristok, C. & Rodríguez, V. M. & Ruttkies, C. & Schuman, M. & Schweiger, R. & Shahaf, N. & Steinbeck, C. & Tortosa, M. & Treutler, H. & Ueberschaar, N. & Velasco, P. & Weiß, B. M. & Widdig, A. & Neumann, S. & van Dam, N. M. Current Challenges in Plant Eco-Metabolomics Int. J. Mol. Sci. 19     1385 2018
Peters, K. & Gorzolka, K. & Bruelheide, H. & Neumann, S. Computational workflow to study the seasonal variation of secondary metabolites in nine different bryophytes Sci. Data 5     180179 2018
Herz, K. & Dietz, S. & Haider, S. & Jandt, U. & Scheel, D. & Bruelheide, H. Predicting individual plant performance in grasslands Ecol. Evol. 7     8958-8965 2017
Herz, K. & Dietz, S. & Haider, S. & Jandt, U. & Scheel, D. & Bruelheide, H. Drivers of intraspecific trait variation of grass and forb species in German meadows and pastures J. Veg. Sci. 28     705-716 2017
Rana, R. & Herz, K. & Bruelheide, H. & Dietz, S. & Haider, S. & Jandt, U. & Pena, R. Leaf Attenuated Total Reflection Fourier Transform Infrared (ATR-FTIR) biochemical profile of grassland plant species related to land-use intensity Ecol. Indic. 84     803-810 2017
Nakano, R. T. & Piślewska-Bednarek, M. & Yamada, K. & Edger, P. P. & Miyahara, M. & Kondo, M. & Böttcher, C. & Mori, M. & Nishimura, M. & Schulze-Lefert, P. & Hara-Nishimura, I. & Bednarek, P. PYK10 myrosinase reveals a functional coordination between endoplasmic reticulum bodies and glucosinolates in Arabidopsis thaliana Plant J. 89     204-220 2017
Cotrim, C. A. & Weidner, A. & Strehmel, N. & Bisol, T. B. & Meyer, D. & Brandt, W. & Wessjohann, L. A. & Stubbs, M. T. A Distinct Aromatic Prenyltransferase Associated with the Futalosine Pathway ChemistrySelect 2     9319-9325 2017
Ziegler, J. & Schmidt, S. & Strehmel, N. & Scheel, D. & Abel, S. Arabidopsis Transporter ABCG37/PDR9 contributes primarily highly oxygenated Coumarins to Root Exudation Sci. Rep. 7     3704 2017
Witzel, K. & Strehmel, N. & Baldermann, S. & Neugart, S. & Becker, Y. & Becker, M. & Berger, B. & Scheel, D. & Grosch, R. & Schreiner, M. & Ruppel, S. Arabidopsis thaliana root and root exudate metabolism is altered by the growth-promoting bacterium Kosakonia radicincitans DSM 16656T Plant Soil 419     557-573 2017
Mönchgesang, S. & Strehmel, N. & Trutschel, D. & Westphal, L. & Neumann, S. & Scheel, D. Plant-to-Plant Variability in Root Metabolite Profiles of 19 Arabidopsis thaliana Accessions Is Substance-Class-Dependent Int. J. Mol. Sci. 17     1565 2016
Mönchgesang, S. & Strehmel, N. & Schmidt, S. & Westphal, L. & Taruttis, F. & Müller, E. & Herklotz, S. & Neumann, S. & Scheel, D. Natural variation of root exudates in Arabidopsis thaliana-linking metabolomic and genomic data Sci. Rep. 6     29033 2016
Ziegler, J. & Schmidt, S. & Chutia, R. & Müller, J. & Böttcher, C. & Strehmel, N. & Scheel, D. & Abel, S. Non-targeted profiling of semi-polar metabolites in Arabidopsis root exudates uncovers a role for coumarin secretion and lignification during the local response to phosphate limitation J. Exp. Bot. 67     1421-1432 2016
Treutler, H. & Tsugawa, H. & Porzel, A. & Gorzolka, K. & Tissier, A. & Neumann, S. & Balcke, G. U. Discovering Regulated Metabolite Families in Untargeted Metabolomics Studies Anal. Chem. 88     8082-8090 2016
Strehmel, N. & Mönchgesang, S. & Herklotz, S. & Krüger, S. & Ziegler, J. & Scheel, D. Piriformospora indica Stimulates Root Metabolism of Arabidopsis thaliana Int. J. Mol. Sci. 17     1091 2016
Hettwer, K. & Böttcher, C. & Frolov, A. & Mittasch, J. & Albert, A. & von Roepenack-Lahaye, E. & Strack, D. & Milkowski, C. Dynamic metabolic changes in seeds and seedlings of Brassica napus (oilseed rape) suppressing UGT84A9 reveal plasticity and molecular regulation of the phenylpropanoid pathway Phytochemistry 124     46-57 2016
Dobritzsch, M. & Lübken, T. & Eschen-Lippold, L. & Gorzolka, K. & Blum, E. & Matern, A. & Marillonnet, S. & Böttcher, C. & Dräger, B. & Rosahl, S. MATE Transporter-Dependent Export of Hydroxycinnamic Acid Amides Plant Cell 28     583-596 2016
Brömme, T. & Schmitz, C. & Moszner, N. & Burtscher, P. & Strehmel, N. & Strehmel, B. Photochemical Oxidation of NIR Photosensitizers in the Presence of Radical Initiators and Their Prospective Use in Dental Applications ChemistrySelect 1     524-532 2016
Buhtz, A. & Witzel, K. & Strehmel, N. & Ziegler, J. & Abel, S. & Grosch, R. Perturbations in the Primary Metabolism of Tomato and Arabidopsis thaliana Plants Infected with the Soil-Borne Fungus Verticillium dahliae PLOS ONE 10     e0138242 2015
Lee, J. & Eschen-Lippold, L. & Lassowskat, I. & Böttcher, C. & Scheel, D. Cellular reprogramming through mitogen-activated protein kinases Front. Plant Sci. 6     940 2015
Lahrmann, U. & Strehmel, N. & Langen, G. & Frerigmann, H. & Leson, L. & Ding, Y. & Scheel, D. & Herklotz, S. & Hilbert, M. & Zuccaro, A. Mutualistic root endophytism is not associated with the reduction of saprotrophic traits and requires a noncompromised plant innate immunity New Phytol. 207     841-857 2015
Ruttkies, C. & Strehmel, N. & Scheel, D. & Neumann, S. Annotation of metabolites from gas chromatography/atmospheric pressure chemical ionization tandem mass spectrometry data using an in silico generated compound database and MetFrag Rapid Commun. Mass Spectrom. 29     1521-1529 2015
Strehmel, N. & Böttcher, C. & Schmidt, S. & Scheel, D. Profiling of secondary metabolites in root exudates of Arabidopsis thaliana Phytochemistry 108     35-46 2014
Strehmel, N. & Kopka, J. & Scheel, D. & Böttcher, C. Annotating unknown components from GC/EI-MS-based metabolite profiling experiments using GC/APCI(+)-QTOFMS Metabolomics 10     324-336 2014
Schmidt, H. & Günther, C. & Weber, M. & Spörlein, C. & Loscher, S. & Böttcher, C. & Schobert, R. & Clemens, S. Metabolome Analysis of Arabidopsis thaliana Roots Identifies a Key Metabolic Pathway for Iron Acquisition PLOS ONE 9     e102444 2014
Schmid, N. B. & Giehl, R. F. H. & Döll, S. & Mock, H.-P. & Strehmel, N. & Scheel, D. & Kong, X. & Hider, R. C. & von Wirén, N. Feruloyl-CoA 6'-Hydroxylase1-Dependent Coumarins Mediate Iron Acquisition from Alkaline Substrates in Arabidopsis Plant Physiol. 164     160-172 2014
Böttcher, C. & Chapman, A. & Fellermeier, F. & Choudhary, M. & Scheel, D. & Glawischnig, E. The Biosynthetic Pathway of Indole-3-Carbaldehyde and Indole-3-Carboxylic Acid Derivatives in Arabidopsis Plant Physiol. 165     841-853 2014
Lassowskat, I. & Böttcher, C. & Eschen-Lippold, L. & Scheel, D. & Lee, J. Sustained mitogen-activated protein kinase activation reprograms defense metabolism and phosphoprotein profile in Arabidopsis thaliana Front. Plant Sci. 5     554 2014
Landgraf, R. & Smolka, U. & Altmann, S. & Eschen-Lippold, L. & Senning, M. & Sonnewald, S. & Weigel, B. & Frolova, N. & Strehmel, N. & Hause, G. & Scheel, D. & Böttcher, C. & Rosahl, S. The ABC Transporter ABCG1 Is Required for Suberin Formation in Potato Tuber Periderm Plant Cell 26     3403-3415 2014
Neumann, S. & Thum, A. & Böttcher, C. Nearline acquisition and processing of liquid chromatography-tandem mass spectrometry data Metabolomics 9     84-91 2013
Mittasch, J. & Böttcher, C. & Frolov, A. & Strack, D. & Milkowski, C. Reprogramming the Phenylpropanoid Metabolism in Seeds of Oilseed Rape by Suppressing the Orthologs of REDUCED EPIDERMAL FLUORESCENCE1 J. Plant Physiol. 161     1656-1669 2013
Frolov, A. & Henning, A. & Böttcher, C. & Tissier, A. & Strack, D. An UPLC-MS/MS Method for the Simultaneous Identification and Quantitation of Cell Wall Phenolics in Brassica napus Seeds J. Agr. Food Chem. 61     1219-1227 2013
Strehmel, C. & Zhang, Z. & Strehmel, N. & Lensen, M. C. Cell phenotypic changes of mouse connective tissue fibroblasts (L-929) to poly(ethylene glycol)-based gels Biomater. Sci. 1     850-859 2013
Hummel, J. & Strehmel, N. & Bölling, C. & Schmidt, S. & Walther, D. & Kopka, J. Mass Spectral Search and Analysis Using the Golm Metabolome Database     The Handbook of Plant Metabolomics   321-343 2013
Frerigmann, H. & Böttcher, C. & Baatout, D. & Gigolashvili, T. Glucosinolates are produced in trichomes of Arabidopsis thaliana Front. Plant Sci. 3     242 2012
Parthier, C. & Görlich, S. & Jaenecke, F. & Breithaupt, C. & Bräuer, U. & Fandrich, U. & Clausnitzer, D. & Wehmeier, U. F. & Böttcher, C. & Scheel, D. & Stubbs, M. T. The O-Carbamoyltransferase TobZ Catalyzes an Ancient Enzymatic Reaction Angew. Chem. Int. Ed. 51     4046-4052 2012
Parthier, C. & Görlich, S. & Jaenecke, F. & Breithaupt, C. & Bräuer, U. & Fandrich, U. & Clausnitzer, D. & Wehmeier, U. F. & Böttcher, C. & Scheel, D. & Stubbs, M. T. Die O-Carbamoyltransferase TobZ katalysiert eine enzymatische Reaktion frühen Ursprungs Angew. Chem. 124     4122-4128 2012
Kuhl, C. & Tautenhahn, R. & Böttcher, C. & Larson, T. R. & Neumann, S. CAMERA: An Integrated Strategy for Compound Spectra Extraction and Annotation of Liquid Chromatography/Mass Spectrometry Data Sets Anal. Chem. 84     283-289 2012
Rasche, F. & Svatoš, A. & Maddula, R. K. & Böttcher, C. & Böcker, S. Computing Fragmentation Trees from Tandem Mass Spectrometry Data Anal. Chem. 83     1243-1251 2011
Geu-Flores, F. & Møldrup, M. E. & Böttcher, C. & Olsen, C. E. & Scheel, D. & Halkier, B. A. Cytosolic γ-Glutamyl Peptidases Process Glutathione Conjugates in the Biosynthesis of Glucosinolates and Camalexin in Arabidopsis Plant Cell 23     2456-2469 2011
Clauß, K. & von Roepenack-Lahaye, E. & Böttcher, C. & Roth, M. R. & Welti, R. & Erban, A. & Kopka, J. & Scheel, D. & Milkowski, C. & Strack, D. Overexpression of Sinapine Esterase BnSCE3 in Oilseed Rape Seeds Triggers Global Changes in Seed Metabolism Plant Physiol. 155     1127-1145 2011
Schmidt, H. & Böttcher, C. & Trampczynska, A. & Clemens, S. Use of recombinantly produced 15N3-labelled nicotianamine for fast and sensitive stable isotope dilution ultra-performance liquid chromatography/electrospray ionization time-of-flight mass spectrometry Anal. Bioanal. Chem. 399     1355-1361 2011
Schenke, D. & Böttcher, C. & Lee, J. & Scheel, D. Verticillin A is likely not produced by Verticillium sp. J. Antibiot. 64     523-524 2011
Schenke, D. & Böttcher, C. & Scheel, D. Crosstalk between abiotic ultraviolet-B stress and biotic (flg22) stress signalling in Arabidopsis prevents flavonol accumulation in favor of pathogen defence compound production Plant Cell Environ. 34     1849-1864 2011
Böttcher, C. & von Roepenack-Lahaye, E. & Scheel, D. Resources for Metabolomics Plant Genetics and Genomics: Crops and Models 9 Genetics and Genomics of the Brassicaceae   469-503 2011
Isaure, M.-P. & Sarret, G. & Harada, E. & Choi, Y.-E. & Marcus, M. A. & Fakra, S. C. & Geoffroy, N. & Pairis, S. & Susini, J. & Clemens, S. & Manceau, A. Calcium promotes cadmium elimination as vaterite grains by tobacco trichomes Geochim. Cosmochim. Acta 74     5817-5834 2010
Harada, E. & Kim, J.-A. & Meyer, A. J. & Hell, R. & Clemens, S. & Choi, Y.-E. Expression Profiling of Tobacco Leaf Trichomes Identifies Genes for Biotic and Abiotic Stresses Plant Cell Physiol. 51     1627-1637 2010
Bartsch, M. & Bednarek, P. & Vivancos, P. D. & Schneider, B. & von Roepenack-Lahaye, E. & Foyer, C. H. & Kombrink, E. & Scheel, D. & Parker, J. E. Accumulation of Isochorismate-derived 2,3-Dihydroxybenzoic 3-O-β-D-Xyloside in Arabidopsis Resistance to Pathogens and Ageing of Leaves J. Biol. Chem. 285     25654-25665 2010
Tennstedt, P. & Peisker, D. & Böttcher, C. & Trampczynska, A. & Clemens, S. Phytochelatin Synthesis Is Essential for the Detoxification of Excess Zinc and Contributes Significantly to the Accumulation of Zinc Plant Physiol. 149     938-948 2009
Böttcher, C. & Westphal, L. & Schmotz, C. & Prade, E. & Scheel, D. & Glawischnig, E. The Multifunctional Enzyme CYP71B15 (PHYTOALEXIN DEFICIENT3) Converts Cysteine-Indole-3-Acetonitrile to Camalexin in the Indole-3-Acetonitrile Metabolic Network of Arabidopsis thaliana Plant Cell 21     1830-1845 2009
Böttcher, C. & von Roepenack-Lahaye, E. & Schmidt, J. & Clemens, S. & Scheel, D. Analysis of phenolic choline esters from seeds of Arabidopsis thaliana and Brassica napus by capillary liquid chromatography/electrospray- tandem mass spectrometry J. Mass Spectrom. 44     466-476 2009
Fellenberg, C. & Böttcher, C. & Vogt, T. Phenylpropanoid polyamine conjugate biosynthesis in Arabidopsis thaliana flower buds Phytochemistry 70     1392-1400 2009
Tautenhahn, R. & Böttcher, C. & Neumann, S. Highly sensitive feature detection for high resolution LC/MS BMC Bioinformatics 9     504 2008
Böttcher, C. & Centeno, D. & Freitag, J. & Höfgen, R. & Köhl, K. & Kopka, J. & Kroymann, J. & Matros, A. & Mock, H.-P. & Neumann, S. & Pfalz, M. & von Roepenack-Lahaye, E. & Schauer, N. & Trenkamp, S. & Zubriggen, M. & Fernie, A. R. Teaching (and learning from) metabolomics: The 2006 PlantMetaNet ETNA Metabolomics Research School Physiol. Plant.         2008
Böttcher, C. & von Roepenack-Lahaye, E. & Schmidt, J. & Schmotz, C. & Neumann, S. & Scheel, D. & Clemens, S. Metabolome Analysis of Biosynthetic Mutants Reveals a Diversity of Metabolic Changes and Allows Identification of a Large Number of New Compounds in Arabidopsis Plant Physiol. 147     2107-2120 2008
Ay, N. & Clauß, K. & Barth, O. & Humbeck, K. Identification and characterization of novel senescence-associated genes from barley (Hordeum vulgare) primary leaves Plant Biol. 10     121-135 2008
Meißner, D. & Albert, A. & Böttcher, C. & Strack, D. & Milkowski, C. The role of UDP-glucose:hydroxycinnamate glucosyltransferases in phenylpropanoid metabolism and the response to UV-B radiation in Arabidopsis thaliana Planta 228     663-674 2008
Fellenberg, C. & Milkowski, C. & Hause, B. & Lange, P.-R. & Böttcher, C. & Schmidt, J. & Vogt, T. Tapetum-specific location of a cation-dependent O-methyltransferase in Arabidopsis thaliana Plant J. 56     132-145 2008
Böttcher, C. & Roepenack-Lahaye, E. v. & Willscher, E. & Scheel, D. & Clemens, S. Evaluation of Matrix Effects in Metabolite Profiling Based on Capillary Liquid Chromatography Electrospray Ionization Quadrupole Time-of-Flight Mass Spectrometry Anal. Chem. 79     1507-1513 2007
Tautenhahn, R. & Böttcher, C. & Neumann, S. Annotation of LC/ESI-MS Mass Signals Lecture Notes in Computer Science 4414 Bioinformatics Research and Development. BIRD 2007   371-380 2007
Trampczynska, A. & Böttcher, C. & Clemens, S. The transition metal chelator nicotianamine is synthesized by filamentous fungi FEBS Lett. 580     3173-3178 2006
Spengler, J. & Böttcher, C. & Albericio, F. & Burger, K. Hexafluoroacetone as Protecting and Activating Reagent: New Routes to Amino, Hydroxy, and Mercapto Acids and Their Application for Peptide and Glyco- and Depsipeptide Modification Chem. Rev. 106     4728-4746 2006
Roth, U. & von Roepenack-Lahaye, E. & Clemens, S. Proteome changes in Arabidopsis thaliana roots upon exposure to Cd2+ J. Exp. Bot. 57     4003-4013 2006
Lübken, T. & Arnold, N. & Wessjohann, L. & Böttcher, C. & Schmidt, J. Analysis of fungal cyclopentenone derivatives from Hygrophorus spp. by liquid chromatography/electrospray-tandem mass spectrometry J. Mass Spectrom. 41     361-371 2006
Clemens, S. & Böttcher, C. & Franz, M. & Willscher, E. & v. Roepenack-Lahaye, E. & Scheel, D. Capillary HPLC Coupled to Electrospray Ionization Quadrupole Time-of-flight Mass Spectrometry Biotechnology in Agriculture and Forestry 57 Biotechnology in Agriculture and Forestry   65-79 2006
Harada, E. & von Roepenack-Lahaye, E. & Clemens, S. A cyanobacterial protein with similarity to phytochelatin synthases catalyzes the conversion of glutathione to γ-glutamylcysteine and lacks phytochelatin synthase activity Phytochemistry 65     3179-3185 2004
von Roepenack-Lahaye, E. & Degenkolb, T. & Zerjeski, M. & Franz, M. & Roth, U. & Wessjohann, L. & Schmidt, J. & Scheel, D. & Clemens, S. Profiling of Arabidopsis Secondary Metabolites by Capillary Liquid Chromatography Coupled to Electrospray Ionization Quadrupole Time-of-Flight Mass Spectrometry Plant Physiol. 134     548-559 2004