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Databases and Tools

IPB researchers are continually developing a number of resources, tools and databases for plant, bio- and chemoinformatics research. They are available for order and online use.

Computational Mass Spectrometry

XCMS

LC/MS and GC/MS Data Analysis

CAMERA

Collection of annotation related methods for mass spectrometry data

MassBank

Tandem MS Reference Database

MetFamily

Detection of patterns in metabolomic data with multivariate statistics and clusters of similar fragmentation patterns

Rdisop

Molecular formula calculations

Met Shot

High throughput prioritized acquisition and processing of tandem mass spectra

MetFrag

Insilico Metabolite identifikation

Bioinformatics

cisHighlight

Highlight cis Elements in Promoter Sequences

PaCeQuant

A tool for high-throughput quantification of pavement cell shape. PaCeQuant is included in the MiToBo package for Fiji/ImageJ.

Cytoskeleton Analyzer 2D

Automatic extraction of structural patterns by unsupervised texture analysis and clustering and structure quantification performed based on cell-wise cluster distributions.

FlagScreen

Calibration of aequorinbased calcium measurements

RootDetection

Detects root strands in photographs and measures their lengths


This page was last modified on 16.10.2019.

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