jump to searchjump to navigationjump to content

Databases and Tools

IPB researchers are continually developing a number of resources, tools and databases for plant, bio- and chemoinformatics research. They are available for order and online use.

Computational Mass Spectrometry

XCMS

LC/MS and GC/MS Data Analysis

CAMERA

Collection of annotation related methods for mass spectrometry data

MassBank

Tandem MS Reference Database

MetFamily

For the identification of regulated metabolite families.

Rdisop

Molecular formula calculations        

MetShot

High throughput prioritized acquisition and processing of tandem mass spectra

MetFrag

In‐silico Metabolite identifikation

Bioinformatics

cisHighlight

Highlight cis Elements in Promoter Sequences

PaCeQuant

A tool for high-throughput quantification of pavement cell shape. PaCeQuant is included in the MiToBo package for Fiji/ImageJ.

CytoskeletonAnalyzer2D

For the quantification of cytoskeleton structural patterns in microscopy images with texture measures.

FlagScreen

Calibration of aequorin‐based calcium measurements

RootDetection

Detects root strands in photographs and measures their lengths.


Protein Models

Protein structures based on both de-novo molecular dynamics and homology modelling.

This page was last modified on 06.12.2019.

IPB Mainnav Search